on Modelling and Measuring Biohybrid
Multi-Level Complex Systems
20 – 23 February 2024
University of Graz, Austria
The goal of this winter school is to teach state-of-the-art methods to study bio-hybrid systems that are composed of technological agents and living agents which both interact with each other and across the aisle.
In these bio-hybrid systems, the living component is comprised of social organisms which can be humans, social insects, swarm-forming organisms or even plant or bacterial communities. It is pivotal to study such dense systems from a connectivity-oriented perspective as often emergent properties arise from non-linear interactions that create pattern-forming feedback loops within the overall system.
In order to sufficiently model and comprehensively measure such systems the perspective to be taken is a multi-level one: observations and modelling both have to consider the individual behaviours, the resulting global collective behaviours and potentially also diverse group behaviour between those system layers.
In this winter school we will study systems that are comprised of technology and honeybees, technology and plants and technology and humans and investigate technology that observes aquatic organisms that respond to changes in the quality of their habitat. The program will be completed by an opening keynote talk, a discussion round, thematically connected lectures given by selected researchers and a networking event.
This winter school will give an opportunity to interested students and young researchers to widen their knowledge in the field of bio-hybrid systems and multi-level modelling.
We foresee that especially participants from the field of bio-robotics, swarm-robotics, swarm biology, ethology, ecological modelling and modelling of swarm-intelligent systems/algorithms will benefit from attending this winter school.
Information & Fees
Lectures and practicals will take place at the Institute of Biology and the Artificial Life Lab of the University of Graz in Graz, Austria. The winter school will provide coffee breaks after the lectures and a networking event. Travel, accommodation and meals are at the expense of the participants (for grants see “Travel grants for women in STEM”).
Accepted participants will have to pay a fee of 60,- EUR in advance. The fee secures the place in the winter school and is non-refundable.
Organizing Committee: Martina Szopek, Thomas Schmickl, Miriam Autenrieth, Alexander Goritschnig (University of Graz)
The BioRobotics Institute,
Sant’Anna School of Advanced Studies
Pontedera, Pisa, Italy
Keynote: From life-like to living technologies – the new frontiers of bionics science and technology
Donato Romano [M.Sc. in Agriculture Science and Technologies (honors) 2014, PhD in BioRobotics (honors) 2018] is currently an Assistant Professor at The BioRobotics Institute of Scuola Superiore Sant’Anna in Pisa, Italy, where he coordinates the Biorobotic Ecosystems Laboratory, and teaches course in the M.Sc. Program in Bionics Engineering. Romano is mainly focusing his activities on bioinspired and biomimetic robotics, and in particular on animal-robot interaction, biohybrid systems, natural and biohybrid intelligence, ethorobotics, neuroethology. Major aims of his research are understanding biological systems complexity, biodiversity preservation, sustainable environmental management, life support in extreme scenarios. He is co-founder and R&D Director of the HUBILIFE srl (spin-off of Scuola Superiore Sant’Anna) aimed at developing and commercializing bioinspired devices to improve human daily life. He also worked as visiting scholar at Khalifa University, Abu Dhabi (UAE), where he carried out research activities in the framework of Terahertz (THz) frequency band to study the interaction between radiation and biological molecules and tissues. Romano has published more than 70 studies on highly-ranked international journals with impact factor. His H-index is 22 (Scopus, September 2023). He received national and international recognitions for his research. Romano is Member of the Editorial Board for several international scientific journals. He is Coordinator, PI, or partner of several national and international research projects.
- Anticipatory mechanism for complex decisions in a bio-hybrid beehive
Heinrich Mellmann, Humboldt University of Berlin
- The history of biohybrids in water
Ronald Thenius, University of Graz
- Time series analysis for intelligent plants
Till Aust, Eduard Buss, University of Konstanz
- Biohybrids as a tool to assess multiple dynamics in a single experiment
Stamatios Nicolis, Free University of Brussels
- Daphnids – The detective life-form
Wiktoria Rajewicz, University of Graz
- Synchronization of the brain with the metaverse
Silvia Kober, University of Graz
Day 2 (21.2.2024):
A Vision-based Localization Using Fiducial Markers
B Phytosensing – Using Plants as Sensors
C Bio-hybrids in Water – Approaches and Methods
Day 3 (22.2.2024):
D Simple Bee Colony Temperature Measuring Process
E Modelling Bio-hybrid Multi-level Complex Systems
Day 4 (23.2.2024):
F Brain-Computer Interface – Controlling Virtual Reality with Brain Signals
G Modelling and 3D Printing for Bio-hybrids
The number of participants will be limited to the available places in the practicals. Students interested in participating should submit their CV, a short motivation letter and a list of their preferred practicals to firstname.lastname@example.org
EXTENDED Deadline: 26 November 2023
Please include in your application a list of preferred practicals as follows (practicals description):
- Day 2: Indicate your first and second choice (participants will be able to attend one of the three parallel practicals).
- Day 3: Participants will attend both practicals, no selection needed.
- Day 4: Indicate your preferred practical (participants will be able to attend one of the two parallel practicals).
Day 2: first choice: A, second choice: C
Day 4: F
Please note: Most practicals require prior knowledge (see “Requirements“ in practicals descriptions). The organizers will take the selections of the applicants as well as their respective background into account, but cannot guarantee a place in the first choice practicals as the number of participants in each is limited. Every participant has to bring their own laptop, practical specific software requirements will be sent out to the participants beforehand.
Applicants will be notified of their acceptance and their assigned practicals by 4 December 2023. To secure the place at the winter school the fee of 60,- EUR has to be paid by 12 December 2023.
Involvement of participants
We expect from each participant the following effort to obtain the certificate:
– Preparation for practicals:
paper reading (approx. 30 hours),
software set up (approx. 20 hours)
– Lectures (4 hours)
– Discussion (3 hours)
– Practicals (16 hours)
Total: 73 hours (equivalent of 3 ECTS*)
Note: Additional 2 ECTS* equivalents can be obtained by handing in additional assignments within 3 weeks after the winter school: a protocol describing the work performed in the practicals (1 ECTS*) and/or a final report about the overall experience (details will be given at the winter school) (1 ECTS*).
Students from Arqus universities
Five places are reserved for the best 5 applicants from the Arqus universities. These students have to meet the general requirements for acceptance in the first place. Other Arqus students may be selected based on their applications, being ranked for spots within the general pool of applicants.
* Recognition of the provided winter school certificate for ECTS credits depends on the respective university/study program of each participant and cannot be guaranteed by the organizers of the winter school.
Travel grants for women in STEM:
To support women in STEM, the project HIVEOPOLIS is awarding travel grants to three female student applicants. The decision will be made by the Winter School Organisation Committee based on the applications and cannot be contested. Eligible expenses are travel and accommodation costs up to € 1.000,- which will be refunded after the winter school.**
- Female students studying full-time in a STEM field (bachelor, master or PhD program)
Application Requirements (together with the winter school application, same deadline applies):
- A letter of recommendation
- Proof of college/university enrollment
Grantees will be notified by 4 December 2023 together with the winter school acceptance notification.
** Economy class (flight) or 2nd class (train); accommodation max. € 100,-/night, for max. 5 nights in total in the period from 19.2.2024 to 24.2.2024. Original invoices, tickets and payment confirmations must be provided. Students employed in the project HIVEOPOLIS are not eligible to apply for the travel grant.
Practical A: Vision-based Localization Using Fiducial Markers
T. Krajnik, J. Ulrich
Chronorobotics laboratory, Czech Technical University
In this practical we will learn to use a simple, but efficient vision-based localization system based on printers black and white markers. The system can detect, localize and track several fiducial markers in images captured by off the shelf cameras.
Requirements: PC/Laptop with Linux (Ubuntu), Basic skills C/C++
Practical B: Phytosensing – Using Plants as Sensors
T. Aust, E. Buss
Department of Computer and Information Science, Cyber Physical Systems, University of Konstanz
In the practical session, we will begin by providing a brief overview of our idea of utilizing plants as environmental sensors. Following that, we will present a selection of gathered plant physiological data from already conducted experiments. The participants will use this data to learn about data preprocessing, including tasks such as data cleaning and smoothing as well as feature extraction, selection and representation in the context of plant physiological signals. Further, the participants will learn about machine learning techniques, i.e., deep learning or statistical approaches for classifying time series, which they will apply to the preprocessed data to infer the environmental condition of the plant based on its physiological signals.
Requirements: Some basic experience in Python and programming
Practical C: Bio-hybrids in Water – Approaches and Methods
R. Thenius, W. Rajewicz, N. Helmer
Institute of Biology, Artificial Life Lab, University of Graz
In this practical different methods to detect substances in the environment will be presented, and methods to detect changes in the environment will be discussed. Further the participants have the ability to work with real-world data to learn how to evaluate behavioural and physiological changes in life forms, induced by changes in the environment.
Requirements: Experience in Python 3, especially regarding handling of CSV-files. Experiences with Pandas or Python statistical packages are advantageous.
Practical D: Simple Bee Colony Temperature Measuring Process
V. Komasilovs, A. Kviesis
Faculty of Information Technologies, Latvia University of Life Sciences and Technologies
The aim of this practical workshop is to demonstrate implementation of a simple bee colony temperature monitoring solution. Within the workshop the following topics will be discussed: overall architecture for end-to-end data handling, hardware components and assembly, peculiarities of embedded software, cloud software and its deployment specifics, data visualisation using Grafana.
Requirements: PCs/laptops with Linux. Basic knowledge of electronics and programming are beneficial. Examples will be in C/C++, Python and will cover the usage of Docker, MQTT
Practical E: Modelling Bio-hybrid Multi-level Complex Systems
M. Stefanec, D. Hofstadler, L. Fedotoff
Institute of Biology, Artificial Life Lab, University of Graz
In complex, biological, self-organising social systems, group or swarm effects occur at a higher system level through interactions at the microscopic level (interactions between individuals). These phenomena often lead to group effects, new properties emerge through the interactions. In this practical session, we will approach such complex biological systems from the modelling side, using a bottom-up approach to model a system that exhibits swarm intelligent properties.
Practical F: Brain-Computer Interface – Controlling Virtual Reality with Brain Signals
S. Kober, L. Berger
Institute of Psychology, Neuropsychology & Neuroimaging, University of Graz
In this practical, we will record brain signals using the electroencephalogram (EEG) and use these signals to control virtual reality (VR) scenarios. Therefore, the recorded EEG signal will be processed in real-time, a virtual environment will be designed, and finally, the EEG signals and the virtual environment will be synchronised. The aim is to use the brain signals to control the VR.
Practical G: Modelling and 3D Printing for Bio-hybrids
Institute of Biology, Artificial Life Lab, University of Graz
In the project HIVEOPOLIS, we put the emphasis on technological (software and hardware) and material design-led mechanisms to create closed feedback loops between honeybees and their immediate environment as well as the ecosystem at large. Many structural, mechanical, modular, thermal, biological, and environmental requirements must be met in order for a beehive design to support all technologies and an entire honeybee colony. We take advantage of the potentials of 3D printing in two key ways to compromise many competing criteria, such as durability and precision, with biologically compatible, and ideally 100% biologically resourced or grown materials: scaffolds made of porous, quickly produced parts and mechanically precise, durable parts. We will practise two types of 3D modelling techniques in this practical, which are geared toward 3D printing as a fabrication method. In an associative parametric modelling environment, we will base our design thinking on individually established -or in teams- biohybrid design scenarios, and produce finished prototypes that combine these two ends of material needs.
Objectives: 1. Create hybrid designs that are part human invention and part systemic living entities or use a living system to participate (guide you) in the design of something. Which functional criteria need more top down design methods and engineered materials? Which functional criteria can be fulfilled via using porous mycelium materials? 2. And in all cases, using hypothesis testing as a design method.